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Mike
External


Since: Oct 09, 2006
Posts: 33



PostPosted: Sat Dec 30, 2006 6:42 pm    Post subject: help me make decision about purchasing/building a computer system for high performance computings?
Archived from groups: comp>os>linux>misc, others (more info?)

Hi all,

I need your advice/suggestions on which system to choose/purchase/build in
order to do high performance computations.

The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++, GSL,
GMP, MPFR, etc.

The area of computations are numerical computation, symbolic computation,
numerical optimization(about mid size).

I am looking for cost-effective solutions using my own money as a student
and this is not officially supported by any grant.

The goal is to find a solution that can make the computation as fast as
possible. For example, my current program needs quite a few days to finish,
and it may well take 10+ days. I have to make progress. The school owned
small cluster is shared and the fair-usage policy makes it slow. The
supercomputers might be a good solution (can anybody tell me which are the
good super computers that I can use?) But supercomputers have a huge
waiting time.

I did some research, it seems that I have 2 options:

1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
computers, and build a clustering system. (I hope the cost is less than
$2000) .

2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going to
be around $2000 at least. And since the technology is quite new, so they
might be over priced currently.

In both cases, $2000 is a big number for me. I am willing to save a lot in
order to build such a system. The reason is obvious: higher computing power
means higher efficiency and higher productivity. It will pay off in the long
run.

Which option do you think that will give me the most performance gain with
respect to my specific computation areas? Are the software able to utilize
the hardware/system technology fully? Which option is most cost-effective
and easy to maintain?

I welcome specific system configuration examples and experiences, e.g. how
many cluster computers do one dual-core computer compare to in terms of
speed of computations? How about quad-core? Do they really justify their
current high price? I'd like to hear field reports with some first hand
statistics such as Matlab speedup numbers, comparisons, etc.

Thanks a lot and happy new year!
Back to top
Mike
External


Since: Oct 09, 2006
Posts: 33



PostPosted: Sat Dec 30, 2006 7:32 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

<jimmaureenrogers DeleteThis @worldnet.att.net> wrote in message
news:1167535199.579408.303810@k21g2000cwa.googlegroups.com...
> Mike wrote:
>> Hi all,
>>
>> I need your advice/suggestions on which system to choose/purchase/build
>> in
>> order to do high performance computations.
>>
>> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++,
>> GSL,
>> GMP, MPFR, etc.
>>
>> The area of computations are numerical computation, symbolic computation,
>> numerical optimization(about mid size).
>>
> ...
>> I did some research, it seems that I have 2 options:
>>
>> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
>> computers, and build a clustering system. (I hope the cost is less than
>> $2000) .
>>
>> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going
>> to
>> be around $2000 at least. And since the technology is quite new, so they
>> might be over priced currently.
>
> You will only achieve the desired performance increase on a cluster or
> a multi-core computer if your application(s) are either multi-process
> or multi-threaded. A single-threaded application is not going to
> demonstrate any significant performance increase on a multi-core
> system.
>
> Are your numerical applications already designed for parallel
> computation?
>
> Jim Rogers
>

On one hand, I need computing power for various programs. Some programs will
be written by myself in C/C++, that I can control. Please tell me which
multi-process or multi-thread programming skill I need to learn?

You mention both multi-process and multi-thread programming? I have to learn
both? Which libraries are the best for each cases? I am guessing that for
dual/quad core programming, I need multi-thread; for clustering, I need
multi-process? Am I right?

I am looking for a solution... Thanks a lot for your advice!
Back to top
Mike
External


Since: Oct 09, 2006
Posts: 33



PostPosted: Sat Dec 30, 2006 7:33 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

<jimmaureenrogers.TakeThisOut@worldnet.att.net> wrote in message
news:1167535199.579408.303810@k21g2000cwa.googlegroups.com...
> Mike wrote:
>> Hi all,
>>
>> I need your advice/suggestions on which system to choose/purchase/build
>> in
>> order to do high performance computations.
>>
>> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++,
>> GSL,
>> GMP, MPFR, etc.
>>
>> The area of computations are numerical computation, symbolic computation,
>> numerical optimization(about mid size).
>>
> ...
>> I did some research, it seems that I have 2 options:
>>
>> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
>> computers, and build a clustering system. (I hope the cost is less than
>> $2000) .
>>
>> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going
>> to
>> be around $2000 at least. And since the technology is quite new, so they
>> might be over priced currently.
>
> You will only achieve the desired performance increase on a cluster or
> a multi-core computer if your application(s) are either multi-process
> or multi-threaded. A single-threaded application is not going to
> demonstrate any significant performance increase on a multi-core
> system.
>
> Are your numerical applications already designed for parallel
> computation?
>
> Jim Rogers
>

For the applications that are not written by me, I have no control. That's
why you can see I post my question on Matlab, and Maple newsgroups. I'd like
to hear their ideas and comments. I didn't post on Mathematica newsgroup
because that one is slow. However if anybody had experience about using
clustering and multi-core on Mathematica, please shed some lights on me...
Thanks!
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ray
External


Since: Nov 13, 2004
Posts: 3387



PostPosted: Sat Dec 30, 2006 8:52 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

On Sat, 30 Dec 2006 19:32:20 -0800, Mike wrote:

>
> <jimmaureenrogers.TakeThisOut@worldnet.att.net> wrote in message
> news:1167535199.579408.303810@k21g2000cwa.googlegroups.com...
>> Mike wrote:
>>> Hi all,
>>>
>>> I need your advice/suggestions on which system to choose/purchase/build
>>> in
>>> order to do high performance computations.
>>>
>>> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++,
>>> GSL,
>>> GMP, MPFR, etc.
>>>
>>> The area of computations are numerical computation, symbolic computation,
>>> numerical optimization(about mid size).
>>>
>> ...
>>> I did some research, it seems that I have 2 options:
>>>
>>> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
>>> computers, and build a clustering system. (I hope the cost is less than
>>> $2000) .
>>>
>>> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going
>>> to
>>> be around $2000 at least. And since the technology is quite new, so they
>>> might be over priced currently.
>>
>> You will only achieve the desired performance increase on a cluster or
>> a multi-core computer if your application(s) are either multi-process
>> or multi-threaded. A single-threaded application is not going to
>> demonstrate any significant performance increase on a multi-core
>> system.
>>
>> Are your numerical applications already designed for parallel
>> computation?
>>
>> Jim Rogers
>>
>
> On one hand, I need computing power for various programs. Some programs will
> be written by myself in C/C++, that I can control. Please tell me which
> multi-process or multi-thread programming skill I need to learn?

Optimization and parallelization. And these are not simple topics.


>
> You mention both multi-process and multi-thread programming? I have to learn
> both? Which libraries are the best for each cases? I am guessing that for
> dual/quad core programming, I need multi-thread; for clustering, I need
> multi-process? Am I right?
>
> I am looking for a solution... Thanks a lot for your advice!
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General Schvantzkoph
External


Since: Dec 29, 2004
Posts: 1207



PostPosted: Sun Dec 31, 2006 4:08 am    Post subject: Re: help me make decision about purchasing/building a computer [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

On Sat, 30 Dec 2006 18:42:17 -0800, Mike wrote:

> Hi all,
>
> I need your advice/suggestions on which system to choose/purchase/build in
> order to do high performance computations.
>
> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++, GSL,
> GMP, MPFR, etc.
>
> The area of computations are numerical computation, symbolic computation,
> numerical optimization(about mid size).
>
> I am looking for cost-effective solutions using my own money as a student
> and this is not officially supported by any grant.
>
> The goal is to find a solution that can make the computation as fast as
> possible. For example, my current program needs quite a few days to finish,
> and it may well take 10+ days. I have to make progress. The school owned
> small cluster is shared and the fair-usage policy makes it slow. The
> supercomputers might be a good solution (can anybody tell me which are the
> good super computers that I can use?) But supercomputers have a huge
> waiting time.
>
> I did some research, it seems that I have 2 options:
>
> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
> computers, and build a clustering system. (I hope the cost is less than
> $2000) .
>
> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going to
> be around $2000 at least. And since the technology is quite new, so they
> might be over priced currently.
>
> In both cases, $2000 is a big number for me. I am willing to save a lot in
> order to build such a system. The reason is obvious: higher computing power
> means higher efficiency and higher productivity. It will pay off in the long
> run.
>
> Which option do you think that will give me the most performance gain with
> respect to my specific computation areas? Are the software able to utilize
> the hardware/system technology fully? Which option is most cost-effective
> and easy to maintain?
>
> I welcome specific system configuration examples and experiences, e.g. how
> many cluster computers do one dual-core computer compare to in terms of
> speed of computations? How about quad-core? Do they really justify their
> current high price? I'd like to hear field reports with some first hand
> statistics such as Matlab speedup numbers, comparisons, etc.
>
> Thanks a lot and happy new year!

I've been doing a lot of benchmarking on my systems in the last few days.
What I've found is that the Core2 Duo is generally about 25% faster on a
clock for clock basis then the Athlon 64 X2 (with 1M caches, the 1/2M
Cache version of the A64 is slower). In some cases the Core2 is as much as
65% faster. With respect to my old P4 Xeon system each core is between
210% and 350% faster than each processor in the Xeon system. What this
says is that you shouldn't consider a cluster of P4s unless the P4 systems
can be had for less than $350 each. My Core2 Duo E6700 with 4G of DDR 800
RAM cost me around $1.5K to build (got the parts from Newegg). You can
save some money by buying slower RAM. The FSB on the Core2s is the
bottleneck so anything faster than 533MHz (which exactly matches the FSB
speed which is 1066MHz) is wasted. My measurements are showing that the
performance difference between running the RAM at 533MHz and running it at
800MHz is only 1%. The Core2 also seems to be very overclockable. I was
able to run at 3.2GHz using the stock Intel cooler for about 12 hours
before the system crashed on me. My guess is that if you got a Thermaltake
Big Typhoon cooler you could get away with overclocking the system which
would give you a further 20% boost.
Back to top
Mike
External


Since: Oct 09, 2006
Posts: 33



PostPosted: Sun Dec 31, 2006 4:08 am    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

"General Schvantzkoph" <schvantzkoph.DeleteThis@yahoo.com> wrote in message
news:4voreoF1cnie8U2@mid.individual.net...
> On Sat, 30 Dec 2006 18:42:17 -0800, Mike wrote:
>
>> Hi all,
>>
>> I need your advice/suggestions on which system to choose/purchase/build
>> in
>> order to do high performance computations.
>>
>> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++,
>> GSL,
>> GMP, MPFR, etc.
>>
>> The area of computations are numerical computation, symbolic computation,
>> numerical optimization(about mid size).
>>
>> I am looking for cost-effective solutions using my own money as a student
>> and this is not officially supported by any grant.
>>
>> The goal is to find a solution that can make the computation as fast as
>> possible. For example, my current program needs quite a few days to
>> finish,
>> and it may well take 10+ days. I have to make progress. The school owned
>> small cluster is shared and the fair-usage policy makes it slow. The
>> supercomputers might be a good solution (can anybody tell me which are
>> the
>> good super computers that I can use?) But supercomputers have a huge
>> waiting time.
>>
>> I did some research, it seems that I have 2 options:
>>
>> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
>> computers, and build a clustering system. (I hope the cost is less than
>> $2000) .
>>
>> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going
>> to
>> be around $2000 at least. And since the technology is quite new, so they
>> might be over priced currently.
>>
>> In both cases, $2000 is a big number for me. I am willing to save a lot
>> in
>> order to build such a system. The reason is obvious: higher computing
>> power
>> means higher efficiency and higher productivity. It will pay off in the
>> long
>> run.
>>
>> Which option do you think that will give me the most performance gain
>> with
>> respect to my specific computation areas? Are the software able to
>> utilize
>> the hardware/system technology fully? Which option is most cost-effective
>> and easy to maintain?
>>
>> I welcome specific system configuration examples and experiences, e.g.
>> how
>> many cluster computers do one dual-core computer compare to in terms of
>> speed of computations? How about quad-core? Do they really justify their
>> current high price? I'd like to hear field reports with some first hand
>> statistics such as Matlab speedup numbers, comparisons, etc.
>>
>> Thanks a lot and happy new year!
>
> I've been doing a lot of benchmarking on my systems in the last few days.
> What I've found is that the Core2 Duo is generally about 25% faster on a
> clock for clock basis then the Athlon 64 X2 (with 1M caches, the 1/2M
> Cache version of the A64 is slower). In some cases the Core2 is as much as
> 65% faster. With respect to my old P4 Xeon system each core is between
> 210% and 350% faster than each processor in the Xeon system. What this
> says is that you shouldn't consider a cluster of P4s unless the P4 systems
> can be had for less than $350 each. My Core2 Duo E6700 with 4G of DDR 800
> RAM cost me around $1.5K to build (got the parts from Newegg). You can
> save some money by buying slower RAM. The FSB on the Core2s is the
> bottleneck so anything faster than 533MHz (which exactly matches the FSB
> speed which is 1066MHz) is wasted. My measurements are showing that the
> performance difference between running the RAM at 533MHz and running it at
> 800MHz is only 1%. The Core2 also seems to be very overclockable. I was
> able to run at 3.2GHz using the stock Intel cooler for about 12 hours
> before the system crashed on me. My guess is that if you got a Thermaltake
> Big Typhoon cooler you could get away with overclocking the system which
> would give you a further 20% boost.


Thank you so much General Schvantzkoph for the invaluable information
consisting of both performance comparisons and cost analysis. That's
extremely helpful to me! I welcome more of such inputs.

Could you also provide speedup statistics about applications such as MATLAB,
Mathematica, Maple, GSL, GMP, MPFR, etc., in terms numerical/floating point
computations and symbolic computations? That would be even greater!

It looks that 1 core is about 3 single P4 CPUs from what you've experienced.

Considering networking bottlenecks, may I say a Quad-core system can compete
with about 10-P4 CPU clustering system, in terms of performance in
scientific computations? If so, then that's very good.

How about the stories from the AMD side? Anybody owns a AMD multi-core
system and/or AMD clustering systems?

When will AMD make its Quad-core CPU available? Shall I wait for AMD's
Quad-core?

Will I be able to build a Quad-core system with < $ 2000 ?

Thanks a lot General Schvantzkoph and everybody!
Back to top
General Schvantzkoph
External


Since: Dec 29, 2004
Posts: 1207



PostPosted: Sun Dec 31, 2006 5:15 am    Post subject: Re: help me make decision about purchasing/building a computer [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

On Sat, 30 Dec 2006 20:31:10 -0800, Mike wrote:

> "General Schvantzkoph" <schvantzkoph.TakeThisOut@yahoo.com> wrote in message
> news:4voreoF1cnie8U2@mid.individual.net...
>> On Sat, 30 Dec 2006 18:42:17 -0800, Mike wrote:
>>
>>> Hi all,
>>>
>>> I need your advice/suggestions on which system to choose/purchase/build
>>> in
>>> order to do high performance computations.
>>>
>>> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++,
>>> GSL,
>>> GMP, MPFR, etc.
>>>
>>> The area of computations are numerical computation, symbolic computation,
>>> numerical optimization(about mid size).
>>>
>>> I am looking for cost-effective solutions using my own money as a student
>>> and this is not officially supported by any grant.
>>>
>>> The goal is to find a solution that can make the computation as fast as
>>> possible. For example, my current program needs quite a few days to
>>> finish,
>>> and it may well take 10+ days. I have to make progress. The school owned
>>> small cluster is shared and the fair-usage policy makes it slow. The
>>> supercomputers might be a good solution (can anybody tell me which are
>>> the
>>> good super computers that I can use?) But supercomputers have a huge
>>> waiting time.
>>>
>>> I did some research, it seems that I have 2 options:
>>>
>>> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
>>> computers, and build a clustering system. (I hope the cost is less than
>>> $2000) .
>>>
>>> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going
>>> to
>>> be around $2000 at least. And since the technology is quite new, so they
>>> might be over priced currently.
>>>
>>> In both cases, $2000 is a big number for me. I am willing to save a lot
>>> in
>>> order to build such a system. The reason is obvious: higher computing
>>> power
>>> means higher efficiency and higher productivity. It will pay off in the
>>> long
>>> run.
>>>
>>> Which option do you think that will give me the most performance gain
>>> with
>>> respect to my specific computation areas? Are the software able to
>>> utilize
>>> the hardware/system technology fully? Which option is most cost-effective
>>> and easy to maintain?
>>>
>>> I welcome specific system configuration examples and experiences, e.g.
>>> how
>>> many cluster computers do one dual-core computer compare to in terms of
>>> speed of computations? How about quad-core? Do they really justify their
>>> current high price? I'd like to hear field reports with some first hand
>>> statistics such as Matlab speedup numbers, comparisons, etc.
>>>
>>> Thanks a lot and happy new year!
>>
>> I've been doing a lot of benchmarking on my systems in the last few days.
>> What I've found is that the Core2 Duo is generally about 25% faster on a
>> clock for clock basis then the Athlon 64 X2 (with 1M caches, the 1/2M
>> Cache version of the A64 is slower). In some cases the Core2 is as much as
>> 65% faster. With respect to my old P4 Xeon system each core is between
>> 210% and 350% faster than each processor in the Xeon system. What this
>> says is that you shouldn't consider a cluster of P4s unless the P4 systems
>> can be had for less than $350 each. My Core2 Duo E6700 with 4G of DDR 800
>> RAM cost me around $1.5K to build (got the parts from Newegg). You can
>> save some money by buying slower RAM. The FSB on the Core2s is the
>> bottleneck so anything faster than 533MHz (which exactly matches the FSB
>> speed which is 1066MHz) is wasted. My measurements are showing that the
>> performance difference between running the RAM at 533MHz and running it at
>> 800MHz is only 1%. The Core2 also seems to be very overclockable. I was
>> able to run at 3.2GHz using the stock Intel cooler for about 12 hours
>> before the system crashed on me. My guess is that if you got a Thermaltake
>> Big Typhoon cooler you could get away with overclocking the system which
>> would give you a further 20% boost.
>
>
> Thank you so much General Schvantzkoph for the invaluable information
> consisting of both performance comparisons and cost analysis. That's
> extremely helpful to me! I welcome more of such inputs.
>
> Could you also provide speedup statistics about applications such as MATLAB,
> Mathematica, Maple, GSL, GMP, MPFR, etc., in terms numerical/floating point
> computations and symbolic computations? That would be even greater!
>
> It looks that 1 core is about 3 single P4 CPUs from what you've experienced.
>
> Considering networking bottlenecks, may I say a Quad-core system can compete
> with about 10-P4 CPU clustering system, in terms of performance in
> scientific computations? If so, then that's very good.
>
> How about the stories from the AMD side? Anybody owns a AMD multi-core
> system and/or AMD clustering systems?
>
> When will AMD make its Quad-core CPU available? Shall I wait for AMD's
> Quad-core?
>
> Will I be able to build a Quad-core system with < $ 2000 ?
>
> Thanks a lot General Schvantzkoph and everybody!

I don't know about Matlab. The applications that I use are NCVerilog,
Xilinx and Altera FPGA tools, so that's what I've benchmarked. As I said in
my earlier post most applications run about 25% faster (clock for clock)
on the Core2. When NCVerilog is in the save state mode (recordvars on) it
runs 69% faster on the Core2. The reason for that is that Cadence has
really tuned NC to take advantage of cache and the Core2 has 4M of unified
cache vs two 1M caches on the Athlon 64 X2 4400+.

You should be able to build a quad core Intel machine for around $2100.
Here is what I paid for my system, you'll need to add $500 for a quad
cores (I got a dual core E6700 which is half the price of a quad core),
about $100 for a disk drive and $30 for an SATA DVD ROM (I already had the
drive and the DVD which is why they aren't in this list). Also I'm not
thrilled with the Abit motherboard, LM Sensors doesn't work with it and it
crashes if you use the On-Demand speed governors. This is the Newegg
invoice,

11-112-100 CASE LIANLI|PC-60BPLUSII BLK RT 1 $129.99 $129.99

13-127-004 MB ABIT AB9 PRO P965 775 1 $145.99 $145.99
Abit (510)-623-0500
14-121-009 VGA ASUS N EN7300LE/HTD/128M R 1 $51.99 $51.99

17-103-437 POWER SP|550WATXEG651P-VEFM(24P)RT 1 $109.99 $109.99

19-115-002 CPU INTEL|C2D E6700 2.66G 775 4M R 1 $509.99 $509.99

20-231-112 MEM 2Gx2|GSK F2-6400CL6D-4GBMQ % 1 $499.99 $499.99
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Barry
External


Since: Dec 31, 2006
Posts: 1



PostPosted: Sun Dec 31, 2006 7:19 am    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

"Mike" <housing2006.TakeThisOut@gmail.com> wrote in message
news:en77pq$r2f$1@news.Stanford.EDU...
> Hi all,
>
> I need your advice/suggestions on which system to choose/purchase/build in
> order to do high performance computations.
>
> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++, GSL,
> GMP, MPFR, etc.
>
> The area of computations are numerical computation, symbolic computation,
> numerical optimization(about mid size).
>
> I am looking for cost-effective solutions using my own money as a student
> and this is not officially supported by any grant.
>
> The goal is to find a solution that can make the computation as fast as
> possible. For example, my current program needs quite a few days to
finish,
> and it may well take 10+ days. I have to make progress. The school owned
> small cluster is shared and the fair-usage policy makes it slow. The
> supercomputers might be a good solution (can anybody tell me which are the
> good super computers that I can use?) But supercomputers have a huge
> waiting time.
>
> I did some research, it seems that I have 2 options:
>
> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
> computers, and build a clustering system. (I hope the cost is less than
> $2000) .
>
> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going
to
> be around $2000 at least. And since the technology is quite new, so they
> might be over priced currently.
>
> In both cases, $2000 is a big number for me. I am willing to save a lot in
> order to build such a system. The reason is obvious: higher computing
power
> means higher efficiency and higher productivity. It will pay off in the
long
> run.
>
> Which option do you think that will give me the most performance gain with
> respect to my specific computation areas? Are the software able to utilize
> the hardware/system technology fully? Which option is most cost-effective
> and easy to maintain?
>
> I welcome specific system configuration examples and experiences, e.g. how
> many cluster computers do one dual-core computer compare to in terms of
> speed of computations? How about quad-core? Do they really justify their
> current high price? I'd like to hear field reports with some first hand
> statistics such as Matlab speedup numbers, comparisons, etc.
>
> Thanks a lot and happy new year!
>
>
>

This has to be a very young kid, or just a spam. It's actually
fairly humorous.
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Baho Utot
External


Since: Dec 31, 2006
Posts: 83



PostPosted: Sun Dec 31, 2006 7:47 am    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

Mike wrote:

> Hi all,
>
> I need your advice/suggestions on which system to choose/purchase/build in
> order to do high performance computations.
>
> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++, GSL,
> GMP, MPFR, etc.
>
> The area of computations are numerical computation, symbolic computation,
> numerical optimization(about mid size).
>
> I am looking for cost-effective solutions using my own money as a student
> and this is not officially supported by any grant.
>
> The goal is to find a solution that can make the computation as fast as
> possible. For example, my current program needs quite a few days to
> finish, and it may well take 10+ days. I have to make progress. The school
> owned small cluster is shared and the fair-usage policy makes it slow. The
> supercomputers might be a good solution (can anybody tell me which are the
> good super computers that I can use?) But supercomputers have a huge
> waiting time.
>
> I did some research, it seems that I have 2 options:
>
> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
> computers, and build a clustering system. (I hope the cost is less than
> $2000) .
>
> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going
> to be around $2000 at least. And since the technology is quite new, so
> they might be over priced currently.
>
> In both cases, $2000 is a big number for me. I am willing to save a lot in
> order to build such a system. The reason is obvious: higher computing
> power means higher efficiency and higher productivity. It will pay off in
> the long run.
>
> Which option do you think that will give me the most performance gain with
> respect to my specific computation areas? Are the software able to utilize
> the hardware/system technology fully? Which option is most cost-effective
> and easy to maintain?
>
> I welcome specific system configuration examples and experiences, e.g. how
> many cluster computers do one dual-core computer compare to in terms of
> speed of computations? How about quad-core? Do they really justify their
> current high price? I'd like to hear field reports with some first hand
> statistics such as Matlab speedup numbers, comparisons, etc.
>
> Thanks a lot and happy new year!

Well I bought a Dell Insperion 1501 notebook with AMD turion x2 with 1 GB
ram and 120MB HD for 800.

So far I have had the cpu usage go past 50%.


--
Dancin in the ruins tonight
Tayo'y Mga Pinoy
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Douglas Mayne
External


Since: Feb 13, 2006
Posts: 282



PostPosted: Sun Dec 31, 2006 10:09 am    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

On Sat, 30 Dec 2006 18:42:17 -0800, Mike wrote:

> Hi all,
>
> I need your advice/suggestions on which system to choose/purchase/build in
> order to do high performance computations.
>
> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++, GSL,
> GMP, MPFR, etc.
>
> The area of computations are numerical computation, symbolic computation,
> numerical optimization(about mid size).
>
> I am looking for cost-effective solutions using my own money as a student
> and this is not officially supported by any grant.
>
> The goal is to find a solution that can make the computation as fast as
> possible. For example, my current program needs quite a few days to finish,
> and it may well take 10+ days. I have to make progress. The school owned
> small cluster is shared and the fair-usage policy makes it slow. The
> supercomputers might be a good solution (can anybody tell me which are the
> good super computers that I can use?) But supercomputers have a huge
> waiting time.
>
> I did some research, it seems that I have 2 options:
>
> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
> computers, and build a clustering system. (I hope the cost is less than
> $2000) .
>
> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going to
> be around $2000 at least. And since the technology is quite new, so they
> might be over priced currently.
>
> In both cases, $2000 is a big number for me. I am willing to save a lot in
> order to build such a system. The reason is obvious: higher computing power
> means higher efficiency and higher productivity. It will pay off in the long
> run.
>
> Which option do you think that will give me the most performance gain with
> respect to my specific computation areas? Are the software able to utilize
> the hardware/system technology fully? Which option is most cost-effective
> and easy to maintain?
>
> I welcome specific system configuration examples and experiences, e.g. how
> many cluster computers do one dual-core computer compare to in terms of
> speed of computations? How about quad-core? Do they really justify their
> current high price? I'd like to hear field reports with some first hand
> statistics such as Matlab speedup numbers, comparisons, etc.
>
> Thanks a lot and happy new year!
>
Disclaimer: I have no experience with clusters. I have no specific advice
for solving your problem.

P3 vs. P4
Generally, from what I have read, the Intel "Core" series of processors
use Pentium 3 designs, which have superior floating point performance over
Pentium 4 designs. I recently built a Core 2 Duo system as a performance
workstation. The new system has dramatically better performance vs. the
older hardware (P3 based) it replaced. This is likely due to the faster
memory bus, and dual FPUs. The memtest program shows large numbers for the
processor's access speed to all memory. This upgrade cost about $900 and
appears to be a good value:

Case $ 50
350W Power ?
E6600 300
Gigabyte DS-3 150
2G 667MHz RAM 200
Disc, video, etc ?

VMWare...
You can start building a /* virtual */ cluster of machines using VMWare.
This obviously won't give any performance improvement vs. a real cluster.
In fact, performance will be slightly degraded by using virtualization.
The benefit is that you can build a /* test */ environment for your
cluster without the expense of having all of the hardware in advance.
You can design your virtual cluster by creating a prototype cluster node
on a virtual network. The cluster nodes can be moved to real hardware
as your finances permit. A big benefit of using a GNU/Linux based
cluster node is that the conversion from virtual to real hardware is
accomplished with minimal tweaking (possibly, as simple as fixing fstab
and the bootloader, and that's it.)

By using VMWare, you can start designing the solution to your problem,
with parallelization in mind. So be it that it will run slower while
in debugging; it will be ready to go and run faster (and correctly) when
you get appropriate computing resources.

--
Douglas Mayne
Back to top
Mike
External


Since: Oct 09, 2006
Posts: 33



PostPosted: Sun Dec 31, 2006 1:47 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

"General Schvantzkoph" <schvantzkoph.DeleteThis@yahoo.com> wrote in message
news:4vovc0F1cnie8U3@mid.individual.net...
> On Sat, 30 Dec 2006 20:31:10 -0800, Mike wrote:
>
>> "General Schvantzkoph" <schvantzkoph.DeleteThis@yahoo.com> wrote in message
>> news:4voreoF1cnie8U2@mid.individual.net...
>>> On Sat, 30 Dec 2006 18:42:17 -0800, Mike wrote:
>>>
>>>> Hi all,
>>>>
>>>> I need your advice/suggestions on which system to choose/purchase/build
>>>> in
>>>> order to do high performance computations.
>>>>
>>>> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++,
>>>> GSL,
>>>> GMP, MPFR, etc.
>>>>
>>>> The area of computations are numerical computation, symbolic
>>>> computation,
>>>> numerical optimization(about mid size).
>>>>
>>>> I am looking for cost-effective solutions using my own money as a
>>>> student
>>>> and this is not officially supported by any grant.
>>>>
>>>> The goal is to find a solution that can make the computation as fast as
>>>> possible. For example, my current program needs quite a few days to
>>>> finish,
>>>> and it may well take 10+ days. I have to make progress. The school
>>>> owned
>>>> small cluster is shared and the fair-usage policy makes it slow. The
>>>> supercomputers might be a good solution (can anybody tell me which are
>>>> the
>>>> good super computers that I can use?) But supercomputers have a huge
>>>> waiting time.
>>>>
>>>> I did some research, it seems that I have 2 options:
>>>>
>>>> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second
>>>> hand
>>>> computers, and build a clustering system. (I hope the cost is less than
>>>> $2000) .
>>>>
>>>> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's
>>>> going
>>>> to
>>>> be around $2000 at least. And since the technology is quite new, so
>>>> they
>>>> might be over priced currently.
>>>>
>>>> In both cases, $2000 is a big number for me. I am willing to save a lot
>>>> in
>>>> order to build such a system. The reason is obvious: higher computing
>>>> power
>>>> means higher efficiency and higher productivity. It will pay off in the
>>>> long
>>>> run.
>>>>
>>>> Which option do you think that will give me the most performance gain
>>>> with
>>>> respect to my specific computation areas? Are the software able to
>>>> utilize
>>>> the hardware/system technology fully? Which option is most
>>>> cost-effective
>>>> and easy to maintain?
>>>>
>>>> I welcome specific system configuration examples and experiences, e.g.
>>>> how
>>>> many cluster computers do one dual-core computer compare to in terms of
>>>> speed of computations? How about quad-core? Do they really justify
>>>> their
>>>> current high price? I'd like to hear field reports with some first hand
>>>> statistics such as Matlab speedup numbers, comparisons, etc.
>>>>
>>>> Thanks a lot and happy new year!
>>>
>>> I've been doing a lot of benchmarking on my systems in the last few
>>> days.
>>> What I've found is that the Core2 Duo is generally about 25% faster on a
>>> clock for clock basis then the Athlon 64 X2 (with 1M caches, the 1/2M
>>> Cache version of the A64 is slower). In some cases the Core2 is as much
>>> as
>>> 65% faster. With respect to my old P4 Xeon system each core is between
>>> 210% and 350% faster than each processor in the Xeon system. What this
>>> says is that you shouldn't consider a cluster of P4s unless the P4
>>> systems
>>> can be had for less than $350 each. My Core2 Duo E6700 with 4G of DDR
>>> 800
>>> RAM cost me around $1.5K to build (got the parts from Newegg). You can
>>> save some money by buying slower RAM. The FSB on the Core2s is the
>>> bottleneck so anything faster than 533MHz (which exactly matches the FSB
>>> speed which is 1066MHz) is wasted. My measurements are showing that the
>>> performance difference between running the RAM at 533MHz and running it
>>> at
>>> 800MHz is only 1%. The Core2 also seems to be very overclockable. I was
>>> able to run at 3.2GHz using the stock Intel cooler for about 12 hours
>>> before the system crashed on me. My guess is that if you got a
>>> Thermaltake
>>> Big Typhoon cooler you could get away with overclocking the system which
>>> would give you a further 20% boost.
>>
>>
>> Thank you so much General Schvantzkoph for the invaluable information
>> consisting of both performance comparisons and cost analysis. That's
>> extremely helpful to me! I welcome more of such inputs.
>>
>> Could you also provide speedup statistics about applications such as
>> MATLAB,
>> Mathematica, Maple, GSL, GMP, MPFR, etc., in terms numerical/floating
>> point
>> computations and symbolic computations? That would be even greater!
>>
>> It looks that 1 core is about 3 single P4 CPUs from what you've
>> experienced.
>>
>> Considering networking bottlenecks, may I say a Quad-core system can
>> compete
>> with about 10-P4 CPU clustering system, in terms of performance in
>> scientific computations? If so, then that's very good.
>>
>> How about the stories from the AMD side? Anybody owns a AMD multi-core
>> system and/or AMD clustering systems?
>>
>> When will AMD make its Quad-core CPU available? Shall I wait for AMD's
>> Quad-core?
>>
>> Will I be able to build a Quad-core system with < $ 2000 ?
>>
>> Thanks a lot General Schvantzkoph and everybody!
>
> I don't know about Matlab. The applications that I use are NCVerilog,
> Xilinx and Altera FPGA tools, so that's what I've benchmarked. As I said
> in
> my earlier post most applications run about 25% faster (clock for clock)
> on the Core2. When NCVerilog is in the save state mode (recordvars on) it
> runs 69% faster on the Core2. The reason for that is that Cadence has
> really tuned NC to take advantage of cache and the Core2 has 4M of unified
> cache vs two 1M caches on the Athlon 64 X2 4400+.
>
> You should be able to build a quad core Intel machine for around $2100.
> Here is what I paid for my system, you'll need to add $500 for a quad
> cores (I got a dual core E6700 which is half the price of a quad core),
> about $100 for a disk drive and $30 for an SATA DVD ROM (I already had the
> drive and the DVD which is why they aren't in this list). Also I'm not
> thrilled with the Abit motherboard, LM Sensors doesn't work with it and it
> crashes if you use the On-Demand speed governors. This is the Newegg
> invoice,
>
> 11-112-100 CASE LIANLI|PC-60BPLUSII BLK RT 1 $129.99 $129.99
>
> 13-127-004 MB ABIT AB9 PRO P965 775 1 $145.99 $145.99
> Abit (510)-623-0500
> 14-121-009 VGA ASUS N EN7300LE/HTD/128M R 1 $51.99 $51.99
>
> 17-103-437 POWER SP|550WATXEG651P-VEFM(24P)RT 1 $109.99 $109.99
>
> 19-115-002 CPU INTEL|C2D E6700 2.66G 775 4M R 1 $509.99 $509.99
>
> 20-231-112 MEM 2Gx2|GSK F2-6400CL6D-4GBMQ % 1 $499.99 $499.99

Thanks a lot! That's very nice description. It is very helpful!

What motherboard do you recommend then?
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Mike
External


Since: Oct 09, 2006
Posts: 33



PostPosted: Sun Dec 31, 2006 1:51 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

"Douglas Mayne" <doug DeleteThis @localhost.localnet> wrote in message
news:pan.2006.12.31.17.08.23.121323@localhost.localnet...
> On Sat, 30 Dec 2006 18:42:17 -0800, Mike wrote:
>
>> Hi all,
>>
>> I need your advice/suggestions on which system to choose/purchase/build
>> in
>> order to do high performance computations.
>>
>> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++,
>> GSL,
>> GMP, MPFR, etc.
>>
>> The area of computations are numerical computation, symbolic computation,
>> numerical optimization(about mid size).
>>
>> I am looking for cost-effective solutions using my own money as a student
>> and this is not officially supported by any grant.
>>
>> The goal is to find a solution that can make the computation as fast as
>> possible. For example, my current program needs quite a few days to
>> finish,
>> and it may well take 10+ days. I have to make progress. The school owned
>> small cluster is shared and the fair-usage policy makes it slow. The
>> supercomputers might be a good solution (can anybody tell me which are
>> the
>> good super computers that I can use?) But supercomputers have a huge
>> waiting time.
>>
>> I did some research, it seems that I have 2 options:
>>
>> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second hand
>> computers, and build a clustering system. (I hope the cost is less than
>> $2000) .
>>
>> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's going
>> to
>> be around $2000 at least. And since the technology is quite new, so they
>> might be over priced currently.
>>
>> In both cases, $2000 is a big number for me. I am willing to save a lot
>> in
>> order to build such a system. The reason is obvious: higher computing
>> power
>> means higher efficiency and higher productivity. It will pay off in the
>> long
>> run.
>>
>> Which option do you think that will give me the most performance gain
>> with
>> respect to my specific computation areas? Are the software able to
>> utilize
>> the hardware/system technology fully? Which option is most cost-effective
>> and easy to maintain?
>>
>> I welcome specific system configuration examples and experiences, e.g.
>> how
>> many cluster computers do one dual-core computer compare to in terms of
>> speed of computations? How about quad-core? Do they really justify their
>> current high price? I'd like to hear field reports with some first hand
>> statistics such as Matlab speedup numbers, comparisons, etc.
>>
>> Thanks a lot and happy new year!
>>
> Disclaimer: I have no experience with clusters. I have no specific advice
> for solving your problem.
>
> P3 vs. P4
> Generally, from what I have read, the Intel "Core" series of processors
> use Pentium 3 designs, which have superior floating point performance over
> Pentium 4 designs. I recently built a Core 2 Duo system as a performance
> workstation. The new system has dramatically better performance vs. the
> older hardware (P3 based) it replaced. This is likely due to the faster
> memory bus, and dual FPUs. The memtest program shows large numbers for the
> processor's access speed to all memory. This upgrade cost about $900 and
> appears to be a good value:
>
> Case $ 50
> 350W Power ?
> E6600 300
> Gigabyte DS-3 150
> 2G 667MHz RAM 200
> Disc, video, etc ?
>
> VMWare...
> You can start building a /* virtual */ cluster of machines using VMWare.
> This obviously won't give any performance improvement vs. a real cluster.
> In fact, performance will be slightly degraded by using virtualization.
> The benefit is that you can build a /* test */ environment for your
> cluster without the expense of having all of the hardware in advance.
> You can design your virtual cluster by creating a prototype cluster node
> on a virtual network. The cluster nodes can be moved to real hardware
> as your finances permit. A big benefit of using a GNU/Linux based
> cluster node is that the conversion from virtual to real hardware is
> accomplished with minimal tweaking (possibly, as simple as fixing fstab
> and the bootloader, and that's it.)
>
> By using VMWare, you can start designing the solution to your problem,
> with parallelization in mind. So be it that it will run slower while
> in debugging; it will be ready to go and run faster (and correctly) when
> you get appropriate computing resources.
>
> --
> Douglas Mayne

Aha, using VMWARE do build virtual cluster is really a great idea! I like it
very much.

How about a building a virtual multi-core program?

I currently don't own a multi-core PC and am waiting for deal time to get
such a PC. However, I'd like start learning the ropes and doing programming
with multi-core in my mind...

Can VMWARE help me do that?

Is there a way to write a program that can run on single CPU PC and on
multi-core and multi-mode cluster without any modification?

Thanks a lot
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Mike
External


Since: Oct 09, 2006
Posts: 33



PostPosted: Sun Dec 31, 2006 2:28 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

"Rob Thorpe" <rthorpe.DeleteThis@realworldtech.com> wrote in message
news:1167569068.765669.318710@v33g2000cwv.googlegroups.com...
> Mike wrote:
>> <jimmaureenrogers.DeleteThis@worldnet.att.net> wrote in message
>> news:1167535199.579408.303810@k21g2000cwa.googlegroups.com...
>> > Mike wrote:
>> >> Hi all,
>> >>
>> >> I need your advice/suggestions on which system to
>> >> choose/purchase/build
>> >> in
>> >> order to do high performance computations.
>> >>
>> >> The software I mostly rely on are: Matlab, Mathematica, Maple, C/C++,
>> >> GSL,
>> >> GMP, MPFR, etc.
>> >>
>> >> The area of computations are numerical computation, symbolic
>> >> computation,
>> >> numerical optimization(about mid size).
>> >>
>> > ...
>> >> I did some research, it seems that I have 2 options:
>> >>
>> >> 1. Buy at deal price(e.g. Dell) 4-5 old P4 computers, or even second
>> >> hand
>> >> computers, and build a clustering system. (I hope the cost is less
>> >> than
>> >> $2000) .
>> >>
>> >> 2. Buy Intel or AMD dual core/cpu or quad core/cpu computer. That's
>> >> going
>> >> to
>> >> be around $2000 at least. And since the technology is quite new, so
>> >> they
>> >> might be over priced currently.
>> >
>> > You will only achieve the desired performance increase on a cluster or
>> > a multi-core computer if your application(s) are either multi-process
>> > or multi-threaded. A single-threaded application is not going to
>> > demonstrate any significant performance increase on a multi-core
>> > system.
>> >
>> > Are your numerical applications already designed for parallel
>> > computation?
>> >
>> > Jim Rogers
>> >
>>
>> On one hand, I need computing power for various programs. Some programs
>> will
>> be written by myself in C/C++, that I can control. Please tell me which
>> multi-process or multi-thread programming skill I need to learn?
>>
>> You mention both multi-process and multi-thread programming? I have to
>> learn
>> both? Which libraries are the best for each cases? I am guessing that for
>> dual/quad core programming, I need multi-thread; for clustering, I need
>> multi-process? Am I right?
>
> Multithreaded programs have:-
> * More than one thread of executing code.
> * Normally only one memory space shared by all the threads.
> Multiprocess programs have:-
> * More than one thread of executing code.
> * More than one memory space. Often one per thread of code.
>
> Multi-core processors and SMP(symmetrical multi-processor) machines can
> be programmed in both ways. Multi-core processors are only SMP systems
> built on a single chip.
>
> Clusters are different. They are connected together with much slower
> interconnects than SMP machines or multi-core processors. To program
> them in parallel you must use multiple processes, and, normally some
> kind of library to communicate between the multiple processes. It is
> more difficult than using SMP.
>
> Generally multi-X programming is more difficult than single-threaded,
> single-process programming. If you are writing code just for research
> then it's worth avoiding because it will take you more time. So, my
> advice is get the machine with the fastest single-threaded performance
> you can find. These days that machine will probably be dual-core.
>

From what I see these days, it looks like multp-core/process
clustering/supercomputer/distributed programming in the future is just like
C/C++ programming today, which is an essential tool that is a MUST for every
scientific engineer/researcher. Is it fair to say this?

If this statement is correct, then maybe it pays off to learn from now to
save time in the long run. What do you think?
Back to top
Mike
External


Since: Oct 09, 2006
Posts: 33



PostPosted: Sun Dec 31, 2006 2:30 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

"Rune Allnor" <allnor RemoveThis @tele.ntnu.no> wrote in message
news:1167570216.319427.322530@a3g2000cwd.googlegroups.com...
>
> Mike skrev:
>>
>> On one hand, I need computing power for various programs. Some programs
>> will
>> be written by myself in C/C++, that I can control. Please tell me which
>> multi-process or multi-thread programming skill I need to learn?
>>
>> You mention both multi-process and multi-thread programming? I have to
>> learn
>> both? Which libraries are the best for each cases? I am guessing that for
>> dual/quad core programming, I need multi-thread; for clustering, I need
>> multi-process? Am I right?
>>
>> I am looking for a solution... Thanks a lot for your advice!
>
> It seems you do not have a particularly suitable starting point
> for doing multi-threading analysis or programming. On the short
> term (i.e. to get through with your thesis and get your degree),
> I'll suggest you take the "loss" and either accept the low perfomance
> of your school's cluster, or wait for time on a supercomputer.
>
> If you start a project as you indicate, be prepared to spend a lot
> of time on learning before you get any sort of results. I would
> suggest you start out in one of two ways, just to learn the basics:
>
> 1) Get two cheap 2nd hand computers and try to make them work
> in cluster. You will spend a bit of time to achieve this; computers
> that
> are state-of-the-art now are likely to be obsolete by the time you
> are finished.
>
> 2) Get a low-cost duo-core computer and learn multi-threading there.
> Again, you will likely spend a bit of time learning the basics,
> so don't spend any huge amounts of $$ on this.
>
> Rune
>


From what I see these days, it looks like multp-core/process
clustering/supercomputer/distributed programming in the future is just like
C/C++ programming today, which is an essential tool that is a MUST for every
scientific engineer/researcher. Is it fair to say this?

If this statement is correct, then maybe it pays off to learn from now to
save time in the long run. What do you think?
Back to top
gort
External


Since: Apr 26, 2006
Posts: 148



PostPosted: Sun Dec 31, 2006 2:38 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

< snipped>

Do you think you two could do a bit of editing next time you post ?

Dave
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Baho Utot
External


Since: Dec 31, 2006
Posts: 83



PostPosted: Sun Dec 31, 2006 2:38 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: comp>os>linux>misc (more info?)

gort wrote:

> < snipped>
>
> Do you think you two could do a bit of editing next time you post ?
>
> Dave

What are you talking about?

--
Dancin in the ruins tonight
Tayo'y Mga Pinoy
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Douglas Mayne
External


Since: Feb 13, 2006
Posts: 282



PostPosted: Sun Dec 31, 2006 3:45 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: comp>os>linux>misc, others (more info?)

On Sun, 31 Dec 2006 13:51:57 -0800, Mike wrote:
<snip>
>
> Aha, using VMWARE do build virtual cluster is really a great idea! I like it
> very much.
>
> How about a building a virtual multi-core program?

Yes. Just setup your vmware machines with multiple processors. Boot the
virtual machines with an SMP kernel.
>
> I currently don't own a multi-core PC and am waiting for deal time to
> get such a PC. However, I'd like start learning the ropes and doing
> programming with multi-core in my mind...

If you have a budget for a new PC, then as I said a system with 2G of RAM
and a E6600 is not too expensive. Your budget may vary, but you mentioned
something about $2000
>
> Can VMWARE help me do that?

It can't hurt. Wink You'll likely come up against similar problems under
either environment (virtual or real.) My point is this: if you have
already worked out the problems of simple clusters in advance using a
virtual environment, you will be that much further along building your
first real cluster.
>
> Is there a way to write a program that can run on single CPU PC and on
> multi-core and multi-mode cluster without any modification?

Yes. The linux kernel can be compiled for SMP. It still boots on systems
with a single CPU. This isn't a cluster related problem. See comments
below: SMP vs. Parrellization.
>
> Thanks a lot
>
Note: comments inline.

Please do not confuse SMP with parallel computing environments (clusters).

Perhaps, some work at the fundamental level is in order here:
http://en.wikipedia.org/wiki/Symmetric_multiprocessing
http://en.wikipedia.org/wiki/Parallel_computing

Also, building a cluster as a "first" GNU/Linux project is not possible,
IMO. You'll need to understand the fundamentals of GNU/Linux setup,
bootstrap, and networking. Jump in there, and be confident of those skills
before attempting to build a cluster. That said, the documentation is out
there for every piece of the puzzle. I know people have had success
building simple clusters in their basements. If you need this for
school, then you may be willing to put in the effort necessary to
achieve your goal. Oh, and, one more thing, check your breakers before
starting, too. Wink

--
Douglas Mayne
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A.L.
External


Since: Dec 31, 2006
Posts: 3



PostPosted: Sun Dec 31, 2006 4:48 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

On Sun, 31 Dec 2006 14:30:16 -0800, "Mike" <housing2006.DeleteThis@gmail.com>
wrote:


>
>From what I see these days, it looks like multp-core/process
>clustering/supercomputer/distributed programming in the future is just like
>C/C++ programming today, which is an essential tool that is a MUST for every
>scientific engineer/researcher. Is it fair to say this?
>

Fair is to say that if proper responding to Usenet messages is too
hard for you (such as cutting quotes) then I don't see slightest
chance that you will be able to build any computer. Not saying about
programming multicore processor.

A.L.
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Mike
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Since: Oct 09, 2006
Posts: 33



PostPosted: Sun Dec 31, 2006 4:48 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

"A.L." <alewando.TakeThisOut@fala2005.com> wrote in message
news:2efgp2tqnfpe8bi6tcgvqs0rrt0otg3db1@4ax.com...
> On Sun, 31 Dec 2006 14:30:16 -0800, "Mike" <housing2006.TakeThisOut@gmail.com>
> wrote:
>
>
>>
>>From what I see these days, it looks like multp-core/process
>>clustering/supercomputer/distributed programming in the future is just
>>like
>>C/C++ programming today, which is an essential tool that is a MUST for
>>every
>>scientific engineer/researcher. Is it fair to say this?
>>
>
> Fair is to say that if proper responding to Usenet messages is too
> hard for you (such as cutting quotes) then I don't see slightest
> chance that you will be able to build any computer. Not saying about
> programming multicore processor.
>
> A.L.

I don't think you have to be that mean for some negligence.
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A.L.
External


Since: Dec 31, 2006
Posts: 3



PostPosted: Sun Dec 31, 2006 5:29 pm    Post subject: Re: help me make decision about purchasing/building a computer system for high performance computings? [Login to view extended thread Info.]
Archived from groups: per prev. post (more info?)

On Sun, 31 Dec 2006 13:47:23 -0800, "Mike" <housing2006.DeleteThis@gmail.com>
wrote:

>Thanks a lot! That's very nice description. It is very helpful!
>
>What motherboard do you recommend then?
>
>

I recommend cutting quotes. It has no sense (and is not polite) to
quote 3 page of trash to add your own 2 sentences.

A.L.
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